andriizayac/ibm_sagebrush_simulations: Code for Zaiats et al. 2022 Ecology and Evolution
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Mechanisms, Modeling |
Majors Flat | Sagebrush Common Garden |
Chinook salmon environmental data and allele frequency matrix
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Mechanisms |
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Code from: A draft genome provides hypotheses on drought tolerance in a keystone plant species in Western North America threatened by climate change
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Mechanisms |
Orchard | Sagebrush Common Garden, Orchard | Seed Collection (Plant IDT-2) |
Code from: Influence of Environmental Conditions at Spawning Sites and Migration Routes on Adaptive Variation and Population Connectivity in Chinook Salmon
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Mechanisms |
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Compiled Idaho sagebrush chemistry and plant herbivore interaction data
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Mechanisms |
Craters | Sagebrush Chemistry, Raft River | Sagebrush Chemistry, Magic Reservoir-Camas | Sagebrush Chemistry/UAS, Cedar Gulch-Leadore | Sagebrush Chemistry/UAS |
Data and Code from: Post-fire seed dispersal of a wind-dispersed shrub declined with distance to seed source, yet had high levels of unexplained variation (capplestein/Sagebrush-Seed-Dispersal: v.1)
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Mechanisms, Modeling |
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Data from: Development of Single Nucleotide Polymorphism (SNP) Panel for determination of environmental influence on genome for wild Columbia River redband trout (Oncorhynchus mykiss gairdnerii) in Southwest Idaho streams
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Mechanisms |
Keithly Creek | Trout Physiology, Upper Mann Creek | Trout Physiology, Little Jacks Creek | Trout Physiology, Duncan Creek | Trout Physiology, Big Jacks Creek | Trout Physiology |
Data from: DNA methylation of two heat-stress genes in redband trout from contrasting thermal environments
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Mechanisms |
Little Jacks Creek Lower Sampling Reach, Little Jacks Creek Upper Sampling Reach, Big Jacks Creek Lower Sampling Reach, Big Jacks Creek Middle Sampling Reach, Big Jacks Creek Upper Sampling Reach, Duncan Creek Lower Sampling Reach, Duncan Creek Middle Sampling Reach, Duncan Creek Upper Sampling Reach, Upper Mann Creek Lower Sampling Reach, Upper Mann Creek Middle Sampling Reach, Upper Mann Creek Upper Sampling Reach, Keithly Creek Lower Sampling Reach, Keithly Creek Middle Sampling Reach, Keithly Creek Upper Sampling Reach |
Data from: Mapping foodscapes and sagebrush morphotypes with unmanned aerial systems for multiple herbivores
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Mapping, Mechanisms |
Magic Reservoir-Camas | Sagebrush Chemistry/UAS, Cedar Gulch-Leadore | Sagebrush Chemistry/UAS |
Data from: Near-infrared spectroscopy aids ecological restoration by classifying variation of taxonomy and phenology of a native shrub
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Mapping, Mechanisms, Modeling |
Raft River | Sagebrush Chemistry, Craters | Sagebrush Chemistry, Cedar Gulch-Leadore | Sagebrush Chemistry/UAS, Magic Reservoir-Camas | Sagebrush Chemistry/UAS |
Data processing scripts for: A Genotype×Environment experiment reveals contrasting response strategies to drought between populations of a keystone species (Artemisia tridentata; Asteraceae)
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Mechanisms, Modeling |
La Sal B | Seed Collection (Plant UTT-2), Highway 95 Hilltop | Seed Collection (Plant IDT-3) |
DNA methylation of two heat-stress genes in redband trout from constrasting thermal environments
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Mechanisms |
Little Jacks Creek Lower Sampling Reach, Little Jacks Creek Upper Sampling Reach, Big Jacks Creek Lower Sampling Reach, Big Jacks Creek Middle Sampling Reach, Big Jacks Creek Upper Sampling Reach, Duncan Creek Lower Sampling Reach, Duncan Creek Middle Sampling Reach, Duncan Creek Upper Sampling Reach, Keithly Creek Lower Sampling Reach, Keithly Creek Middle Sampling Reach, Keithly Creek Upper Sampling Reach, Upper Mann Creek Lower Sampling Reach, Upper Mann Creek Middle Sampling Reach, Upper Mann Creek Upper Sampling Reach |
GEM3-Redband trout collection reports
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Mechanisms, Modeling |
University of Idaho | Hagerman Fish Culture Experiment Station, Fawn Creek | Trout Common Garden Collection Area, Whiskey Jack Creek | Trout Common Garden Lower Collection Area, Whiskey Jack Creek | Trout Common Garden Upper Collection Area, Keithly Creek | Trout Common Garden Collection Area, Williams Creek | Trout Common Garden Collection Area, Pole Bridge Creek | Trout Common Garden Collection Area, Duncan Creek | Trout Common Garden Lower Collection Area, Duncan Creek | Trout Common Garden Upper Collection Area, Big Jacks Creek | Trout Common Garden Collection Area, Little Jacks Creek | Trout Common Garden Collection Area, Trail Creek | Trout Common Garden Collection Area, North Callahan Creek | Trout Common Garden Collection Area, Boulder Creek | Trout Common Garden Collection Area, Upper Mann Creek | Trout Common Garden Collection Area |
Genome by environment adaptive variation in Chinook salmon
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Mechanisms |
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Growth data from: The role of genome duplication in big sagebrush growth and fecundity
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Mechanisms |
Orchard Common Garden | UAS, Ephraim | Sagebrush Common Garden |
A haploid pseudo-chromosome genome assembly for a keystone sagebrush species (Artemisia tridentata) of western North American rangelands
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Mechanisms |
Highway 95 Hilltop | Seed Collection (Plant IDT-3) |
Interannual variation in climate contributes to contingency in post-fire restoration outcomes in seeded sagebrush steppe
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Mechanisms |
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Intraspecific variation in surface water uptake in a perennial desert shrub
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Mechanisms |
Orchard | Sagebrush Common Garden |
Population structure and hybridization in a heteroploid foundational shrub species (Artemisia tridentata)
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Mechanisms |
Oregon Sagebrush Ecotone, Leadore Idaho Sagebrush Ecotone, Pahsimeroi Idaho Sagebrush Ecotone, Castle Rocks Idaho Sagebrush Ecotone, Utah Sagebrush Ecotone |
RAD sequencing of Idaho ground squirrels
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Mechanisms |
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Redband Trout Size and Abundance Data from Big Jacks, Duncan, Little Jacks, Upper Mann and Keithly Creeks 2019-2022
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Mechanisms |
Little Jacks Creek Lower Sampling Reach, Little Jacks Creek Upper Sampling Reach, Big Jacks Creek Lower Sampling Reach, Big Jacks Creek Middle Sampling Reach, Big Jacks Creek Upper Sampling Reach, Duncan Creek Lower Sampling Reach, Duncan Creek Middle Sampling Reach, Duncan Creek Upper Sampling Reach, Upper Mann Creek Lower Sampling Reach, Upper Mann Creek Middle Sampling Reach, Upper Mann Creek Upper Sampling Reach, Keithly Creek Lower Sampling Reach, Keithly Creek Middle Sampling Reach, Keithly Creek Upper Sampling Reach |
Redband Trout Stream Habitat Data for Big Jacks, Duncan, Little Jacks, Upper Mann and Keithly Creeks Idaho USA
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Mechanisms, Modeling |
Little Jacks Creek Lower Sampling Reach, Little Jacks Creek Upper Sampling Reach, Big Jacks Creek Lower Sampling Reach, Big Jacks Creek Middle Sampling Reach, Big Jacks Creek Upper Sampling Reach, Duncan Creek Lower Sampling Reach, Duncan Creek Middle Sampling Reach, Duncan Creek Upper Sampling Reach, Upper Mann Creek Lower Sampling Reach, Upper Mann Creek Middle Sampling Reach, Upper Mann Creek Upper Sampling Reach, Keithly Creek Lower Sampling Reach, Keithly Creek Middle Sampling Reach, Keithly Creek Upper Sampling Reach |
Redband Trout Stream Temperature Data for Big Jacks, Duncan, Little Jacks, Upper Mann and Keithly Creeks 2019-2022
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Mechanisms |
Big Jacks Creek Lower Sampling Reach, Big Jacks Creek Middle Sampling Reach, Big Jacks Creek Upper Sampling Reach, Duncan Creek Lower Sampling Reach, Duncan Creek Middle Sampling Reach, Duncan Creek Upper Sampling Reach, Keithly Creek Lower Sampling Reach, Keithly Creek Middle Sampling Reach, Keithly Creek Upper Sampling Reach, Upper Mann Creek Lower Sampling Reach, Upper Mann Creek Middle Sampling Reach, Upper Mann Creek Upper Sampling Reach, Little Jacks Creek Lower Sampling Reach, Little Jacks Creek Upper Sampling Reach |
The role of neutral and adaptive genomic variation in population diversification and speciation in two ground squirrel species of conservation concern
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Mechanisms |
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Seed yield data from: The role of genome duplication in big sagebrush growth and fecundity
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Mechanisms |
Orchard Common Garden | UAS, Ephraim | Sagebrush Common Garden |
Statistical consideration of nonrandom treatment applications reveal region-wide benefits of widespread post-fire restoration action
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Mechanisms |
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Texas bee phage sequencing
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Mechanisms |
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Thesis | DNA Methylation of heat-stress genes in Redband Trout from contrasting thermal enviornments
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Mechanisms |
Big Jacks Creek Lower Sampling Reach, Big Jacks Creek Middle Sampling Reach, Big Jacks Creek Upper Sampling Reach, Duncan Creek Lower Sampling Reach, Duncan Creek Middle Sampling Reach, Duncan Creek Upper Sampling Reach, Little Jacks Creek Upper Reach | UAS, Little Jacks Creek Lower Reach | UAS, Upper Mann Creek Lower Sampling Reach, Upper Mann Creek Middle Sampling Reach, Upper Mann Creek Upper Sampling Reach, Keithly Creek Lower Sampling Reach, Keithly Creek Middle Sampling Reach, Keithly Creek Upper Sampling Reach |
Thesis | Learning from chemical coping behaviors of wildlife to discover new approaches for pest management
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Mechanisms |
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Thesis | Phenotypic responses of sagebrush to the southwestern North America megadrought: A genotype-by-environment (GxE) approach
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Mechanisms |
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